miRBase entry: oha-mir-875

Stem-loop oha-mir-875

Accession

MI0031486

Description

Ophiophagus hannah oha-mir-875 precursor miRNA

Gene family

MIPF0000424; mir-875

Sequence

auuuguuuagugguacAAUACCUCAGCCUUAUCAGGUgcuguauauauauucaCCUGGAAGUUCUGAGGUUaaguuucacugaacaugag
...((((((((((.((...(((((((.(((.(((((((..(((....))).))))))))))..)))))))...)).))))))))))....

Structure

-auu          u  AAU       -C   A       cu   u 
    uguuuagugg ac   ACCUCAG  CUU UCAGGUg  gua a
    |||||||||| ||   |||||||  ||| |||||||  |||  
    acaagucacu ug   UGGAGUC  GAA GGUCCac  uau u
gagu          u  aaU       UU   -       -u   a

Annotation confidence Not enough data

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Genome context

AZIM01000686.1: 88441-88530 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from oha-mir-875

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature oha-miR-875-5p

Accession	MIMAT0036951
Description	Ophiophagus hannah oha-miR-875-5p mature miRNA
Sequence	17 - AAUACCUCAGCCUUAUCAGGU - 37
Evidence	not_experimental

Mature oha-miR-875-3p

Accession	MIMAT0036952
Description	Ophiophagus hannah oha-miR-875-3p mature miRNA
Sequence	54 - CCUGGAAGUUCUGAGGUU - 71
Evidence	not_experimental

References

PubMed ID: 24297900
The king cobra genome reveals dynamic gene evolution and adaptation in the snake venom system
"Vonk FJ, Casewell NR, Henkel CV, Heimberg AM, Jansen HJ, McCleary RJ, Kerkkamp HM, Vos RA, Guerreiro I, Calvete JJ, Wuster W, Woods AE, Logan JM, Harrison RA, Castoe TA, de Koning AP, Pollock DD, Yandell M, Calderon D, Renjifo C, Currier RB, Salgado D, Pl"
"Proc Natl Acad Sci U S A (2013) 110:20651-20656