miRBase entry: oha-mir-92a-1

Stem-loop oha-mir-92a-1

Accession

MI0031491

Description

Ophiophagus hannah oha-mir-92a-1 precursor miRNA

Gene family

MIPF0000013; mir-25

Sequence

accccuuucuacacAGGUUGGGAUCGGUUGCAAUGCUguguuaaaucaguggUAUUGCACUUGUCCCGGCCUGUugagguuggugggg
.((((..(((..((((((((((((.(((.((((((((.((......))..))))))))))).))))))))))))..))).....))))

Structure

a    ---uu   ac            C   U        -g  uu 
 cccc     ucu  acAGGUUGGGAU GGU GCAAUGCU  ug  a
 ||||     |||  |||||||||||| ||| ||||||||  ||   
 gggg     gga  UGUCCGGCCCUG UCA CGUUAUgg  ac  a
-    ugguu   gu            U   -        ug  ua

Annotation confidence Not enough data

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Genome context

AZIM01002132.1: 157713-157800 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from oha-mir-92a-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature oha-miR-92a-5p

Accession	MIMAT0036958
Description	Ophiophagus hannah oha-miR-92a-5p mature miRNA
Sequence	15 - AGGUUGGGAUCGGUUGCAAUGCU - 37
Evidence	not_experimental

Mature oha-miR-92a-3p

Accession	MIMAT0036959
Description	Ophiophagus hannah oha-miR-92a-3p mature miRNA
Sequence	53 - UAUUGCACUUGUCCCGGCCUGU - 74
Evidence	not_experimental

References

PubMed ID: 24297900
The king cobra genome reveals dynamic gene evolution and adaptation in the snake venom system
"Vonk FJ, Casewell NR, Henkel CV, Heimberg AM, Jansen HJ, McCleary RJ, Kerkkamp HM, Vos RA, Guerreiro I, Calvete JJ, Wuster W, Woods AE, Logan JM, Harrison RA, Castoe TA, de Koning AP, Pollock DD, Yandell M, Calderon D, Renjifo C, Currier RB, Salgado D, Pl"
"Proc Natl Acad Sci U S A (2013) 110:20651-20656