miRBase entry: tae-MIR5050

Stem-loop tae-MIR5050


Accession
MI0031531
Description
Triticum aestivum tae-MIR5050 precursor miRNA
Gene family
MIPF0002014; MIR5050

Literature search
1 open access papers mention tae-MIR5050
(5 sentences)

Sequence

45500 reads, 274 reads per million, 116 experiments
gccggUUGAACGACCUCACCAUGUCGaccgccucuccucaagaagugccagggagaucugcucgugccaugaugaggucguucaaccagc
((.(((((((((((((((.((((.(((.((..((((((............))))))..)).)))...)))).))))))))))))))).))

Structure
  c               C    --U   c  cc      caaga 
gc ggUUGAACGACCUCA CAUG   CGa cg  ucuccu     a
|| ||||||||||||||| ||||   ||| ||  ||||||      
cg ccaacuugcuggagu guac   gcu gu  agaggg     g
  a               a    cgu   c  cu      accgu 


Annotation confidence High
Do you think this miRNA is real?
Comments
This sequence was incorrectly named MIR2013 in [1].

Genome context
Unknown

Database links

Mature tae-miR5050

Accession MIMAT0036989
Description Triticum aestivum tae-miR5050 mature miRNA
Sequence 6 - UUGAACGACCUCACCAUGUCG - 26
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 19499258
    Novel microRNAs uncovered by deep sequencing of small RNA transcriptomes in bread wheat (Triticum aestivum L.) and Brachypodium distachyon (L.) Beauv
    "Wei B, Cai T, Zhang R, Li A, Huo N, Li S, Gu YQ, Vogel J, Jia J, Qi Y, Mao L"
    "Funct Integr Genomics (2009) 9:499-511