Stem-loop tae-MIR6201

Accession

MI0031534

Description

Triticum aestivum tae-MIR6201 precursor miRNA

Gene family

MIPF0001960; MIR6201

Literature search

1 open access papers mention tae-MIR6201
(2 sentences)

Sequence

319 reads, 6 reads per million, 103 experiments

accugaguuUGACCCUGAGGCACUCAUACCGccagcuuguuuagaaugcuagccgcaugagugccucaugcagcgguaucgccgguaugaguguuucagggucaagcuucggu
(((.(((((((((((((((((((((((((((...(((.((.......)).))).(((((((...))))))).(((....)))))))))))))))))))))))))))))).)))

Structure

   u                           ccagcuuguuuagaaugcuagcc       u 
acc gaguuUGACCCUGAGGCACUCAUACCG                       gcaugag  
||| |||||||||||||||||||||||||||                       ||||||| g
ugg uucgaacugggacuuugugaguauggc                       cguacuc  
   c                           ------------cgcuauggcga       c 

Annotation confidence Not enough data

Comments

This sequence was incorrectly named MIR2016 in [1].

Genome context

6A: 206659204-206659316 [-]

Mature tae-miR6201

• Accession: MIMAT0036992
• Description: Triticum aestivum tae-miR6201 mature miRNA
• Sequence: 10 - UGACCCUGAGGCACUCAUACCG - 31
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19499258
   Novel microRNAs uncovered by deep sequencing of small RNA transcriptomes in bread wheat (Triticum aestivum L.) and Brachypodium distachyon (L.) Beauv
   "Wei B, Cai T, Zhang R, Li A, Huo N, Li S, Gu YQ, Vogel J, Jia J, Qi Y, Mao L"
   "Funct Integr Genomics (2009) 9:499-511