miRBase entry: ssc-mir-9828-2

Stem-loop ssc-mir-9828-2


Accession
MI0031596
Description
Sus scrofa ssc-mir-9828-2 precursor miRNA
Gene family
MIPF0001933; mir-9828


Sequence

augugggagccgcccggcuucccgagagacaccugguaugaaugccugaucgaaagagaggucgaguGGUUUCAGGCCGGUCGCUCGAuagaaagaaa
....(((((((....)))))))((((.(((...((((.((((.(((...((((........))))..))))))).))))))).))))...........

Structure
augugggagccgcccggcuucc    a   acc    a    u   uga    aag 
                      cgag gac   uggu ugaa gcc   ucga   a
                      |||| |||   |||| |||| |||   ||||    
                      GCUC CUG   GCCG ACUU UGG   agcu   g
-----------aaagaaagauA    G   ---    G    -   -ug    gga 


Annotation confidence Not enough data
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Genome context
chr12: 61821304-61821401 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from ssc-mir-9828-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ssc-miR-9828-3p

Accession MIMAT0037046
Description Sus scrofa ssc-miR-9828-3p mature miRNA
Sequence 68 - GGUUUCAGGCCGGUCGCUCGA - 88
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24499489
    Exploration of microRNAs in porcine milk exosomes
    Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
    BMC Genomics (2014) 15:100