miRBase entry: ssc-mir-9847-1

Stem-loop ssc-mir-9847-1

Accession

MI0031622

Description

Sus scrofa ssc-mir-9847-1 precursor miRNA

Gene family

MIPF0002065; mir-9847

Sequence

ugcagaagaugcccauaccgagcccugguggaggcagccggucuUGCUCAGGGGGUCAGUGGGGCuuagaaacag
..........((((.(((.((.((((((..(((((.....)))))..))))))..)).)))))))..........

Structure

ugcagaagau    a   c  -g      ug     a 
          gccc uac ga  cccugg  gaggc g
          |||| ||| ||  ||||||  ||||| c
          CGGG GUG CU  GGGACU  Uucug c
gacaaagauu    -   A  GG      CG     g

Annotation confidence Not enough data

Do you think this miRNA is real?

Genome context

chr15: 155366681-155366755 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ssc-mir-9847-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ssc-miR-9847-3p

Accession	MIMAT0037066
Description	Sus scrofa ssc-miR-9847-3p mature miRNA
Sequence	45 - UGCUCAGGGGGUCAGUGGGGC - 65
Evidence	experimental Illumina [1]

References

PubMed ID: 24499489
Exploration of microRNAs in porcine milk exosomes
Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
BMC Genomics (2014) 15:100