Stem-loop sequence ssc-mir-96

Accession

MI0031644 (change log)

Description

Sus scrofa miR-96 stem-loop

Gene family

MIPF0000072; mir-96

Literature search

4 open access papers mention ssc-mir-96
(5 sentences)

Stem-loop

   -   --gg  g  u        a      uu      ---   uc 
5'  cug    cc au uuggcacu gcacau  uugcuu   gug  u
    |||    || || |||||||| ||||||  ||||||   |||   
3'  gac    gg ua aaccguga cgugua  aacgag   cgc  c
   g   gaaa  g  u        -      uu      ucu   cu 

Deep sequencing

2430 reads, 527 reads per million, 15 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Sscrofa10.2; GCA_000003025.4): chr18: 20030888-20030972 [+]
• Overlapping transcripts:

  sense

  ENSSSCT00000020357 ; exon 1

Clustered miRNAs

< 10kb from ssc-mir-96

• ssc-mir-183: chr18: 20030651-20030720 [+]
• ssc-mir-96: chr18: 20030888-20030972 [+]
• ssc-mir-182: chr18: 20035212-20035295 [+]

Database links

• miRBase Tracker:MI0031644

Mature sequence ssc-miR-96-5p

• Accession: MIMAT0037085
• Sequence: 11 - uuuggcacuagcacauuuuugcu - 33
• Deep sequencing: 2428 reads, 15 experiments
• Evidence: experimental; Illumina [1]

References

1. PMID:24499489 "Exploration of microRNAs in porcine milk exosomes" Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL BMC Genomics. 15:100(2014).