Stem-loop ata-MIR167c

Accession

MI0031646

Description

Aegilops tauschii ata-MIR167c precursor miRNA

Gene family

MIPF0000023; MIR167_1

Literature search

1 open access papers mention ata-MIR167c
(12 sentences)

Sequence

ugugaaugagUGAAGCUGCCAGCAUGAUCUAccuuugauucgcuucugcgugugaauccuuguuaGAUCAUGACUGACAGCCUCAUUucuucccag
((.(((.((((((.((((.((((((((((((.(...(((((((........)))))))...).))))))))).))).)))).)))))).))).)).

Structure

-  u   u      A    C   -         c uuu       uuc 
 ug gaa gagUGA GCUG CAG CAUGAUCUA c   gauucgc   u
 || ||| |||||| |||| ||| ||||||||| |   |||||||    
 ac cuu uUUACU CGAC GUC GUACUAGau g   cuaagug   g
g  c   c      C    A   A         u uuc       ugc 

Annotation confidence Not enough data

Genome context

chr5: 62968615-62968710 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ata-MIR167c

Mature ata-miR167c-5p

• Accession: MIMAT0037088
• Description: Aegilops tauschii ata-miR167c-5p mature miRNA
• Sequence: 11 - UGAAGCUGCCAGCAUGAUCUA - 31
• Evidence: experimental ; Illumina [1]

Mature ata-miR167c-3p

• Accession: MIMAT0037089
• Description: Aegilops tauschii ata-miR167c-3p mature miRNA
• Sequence: 66 - GAUCAUGACUGACAGCCUCAUU - 87
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23535592
   Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation
   "Jia J, Zhao S, Kong X, Li Y, Zhao G, He W, Appels R, Pfeifer M, Tao Y, Zhang X, Jing R, Zhang C, Ma Y, Gao L, Gao C, Spannagl M, Mayer KF, Li D, Pan S, Zheng F, Hu Q, Xia X, Li J, Liang Q, Chen J, Wicker T, Gou C, Kuang H, He G, Luo Y, Keller B, Xia Q, Lu"
   "Nature (2013) 496:91-95