miRBase entry: ata-MIR393

Stem-loop ata-MIR393


Accession
MI0031650
Description
Aegilops tauschii ata-MIR393 precursor miRNA
Gene family
MIPF0000083; MIR393


Sequence

uaguggaggaUUCCAAAGGGAUCGCAUUGAUcgaucucuccgucaucggcgugcaaggucgauggauCAGUGCAAUCCCUUUGGAAUUcuccgcucg
.(((((((((((((((((((((.(((((((((...........(((((((.......)))))))))))))))).)))))))))))))))))))))..

Structure
-u                     C         gaucucuccgu       gu 
  aguggaggaUUCCAAAGGGAU GCAUUGAUc           caucggc  g
  ||||||||||||||||||||| |||||||||           |||||||  c
  ucgccucUUAAGGUUUCCCUA CGUGACuag           guagcug  a
gc                     A         -----------       ga 


Annotation confidence Not enough data
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Genome context
chr2: 547638879-547638975 [+]

Database links

Mature ata-miR393-5p

Accession MIMAT0037096
Description Aegilops tauschii ata-miR393-5p mature miRNA
Sequence 11 - UUCCAAAGGGAUCGCAUUGAU - 31
Evidence experimental
Illumina [1]

Mature ata-miR393-3p

Accession MIMAT0037097
Description Aegilops tauschii ata-miR393-3p mature miRNA
Sequence 68 - CAGUGCAAUCCCUUUGGAAUU - 88
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23535592
    Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation
    "Jia J, Zhao S, Kong X, Li Y, Zhao G, He W, Appels R, Pfeifer M, Tao Y, Zhang X, Jing R, Zhang C, Ma Y, Gao L, Gao C, Spannagl M, Mayer KF, Li D, Pan S, Zheng F, Hu Q, Xia X, Li J, Liang Q, Chen J, Wicker T, Gou C, Kuang H, He G, Luo Y, Keller B, Xia Q, Lu"
    "Nature (2013) 496:91-95