Stem-loop ata-MIR166a

Accession

MI0031658

Description

Aegilops tauschii ata-MIR166a precursor miRNA

Gene family

MIPF0000004; MIR166

Literature search

1 open access papers mention ata-MIR166a
(1 sentences)

Sequence

gcuucuggguGGAAUGUUGUCUGGUUCAAGGucucgcucugguuugaggauggaaaccuuucauuucucucagcuuccugcgaucUCGGACCAGGCUUCAUUCCCCucagagauag
..(((((((.((((((..(((((((((.(((((..((...((((.(((((..(((....)))..)))))..))))....))))))).)))))))))..)))))).)))))))....

Structure

--gc       u      UU         A     uc  -ucu    -u     ug   a 
    uucuggg GGAAUG  GUCUGGUUC AGGuc  gc    gguu  gagga  gaa c
    ||||||| ||||||  ||||||||| |||||  ||    ||||  |||||  |||  
    gagacuC CCUUAC  CGGACCAGG Ucuag  cg    ucga  cucuu  cuu c
gaua       C      UU         C     --  uccu    cu     ua   u 

Annotation confidence Not enough data

Genome context

chr1: 255093018-255093133 [+]

Mature ata-miR166a-5p

• Accession: MIMAT0037112
• Description: Aegilops tauschii ata-miR166a-5p mature miRNA
• Sequence: 11 - GGAAUGUUGUCUGGUUCAAGG - 31
• Evidence: experimental ; Illumina [1]

Mature ata-miR166a-3p

• Accession: MIMAT0037113
• Description: Aegilops tauschii ata-miR166a-3p mature miRNA
• Sequence: 86 - UCGGACCAGGCUUCAUUCCCC - 106
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23535592
   Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation
   "Jia J, Zhao S, Kong X, Li Y, Zhao G, He W, Appels R, Pfeifer M, Tao Y, Zhang X, Jing R, Zhang C, Ma Y, Gao L, Gao C, Spannagl M, Mayer KF, Li D, Pan S, Zheng F, Hu Q, Xia X, Li J, Liang Q, Chen J, Wicker T, Gou C, Kuang H, He G, Luo Y, Keller B, Xia Q, Lu"
   "Nature (2013) 496:91-95