miRBase entry: ata-MIR169e

Stem-loop ata-MIR169e


Accession
MI0031660
Description
Aegilops tauschii ata-MIR169e precursor miRNA
Gene family
MIPF0000037; MIR169_2

Literature search
1 open access papers mention ata-MIR169e
(1 sentences)

Sequence

gaguggaaugCAGCCAAGGAUGACUUGCCGAcagcacacaacaaggugguaguaaucuugccggcaaguccguccuuggcuacaccuugcucu
((((((..((.(((((((((((((((((((.((((.(((......)))))........)).)))))))).))))))))))).))..)))))).

Structure
-      aa  C           -        A  --------  a   aa 
 gagugg  ug AGCCAAGGAUG ACUUGCCG ca        gc cac  c
 ||||||  || ||||||||||| |||||||| ||        || |||   
 cucguu  ac ucgguuccugc ugaacggc gu        ug gug  a
u      cc  a           c        c  ucuaauga  -   ga 


Annotation confidence Not enough data
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Genome context
chr2: 452091058-452091150 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from ata-MIR169e
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ata-miR169e-5p

Accession MIMAT0037115
Description Aegilops tauschii ata-miR169e-5p mature miRNA
Sequence 11 - CAGCCAAGGAUGACUUGCCGA - 31
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23535592
    Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation
    "Jia J, Zhao S, Kong X, Li Y, Zhao G, He W, Appels R, Pfeifer M, Tao Y, Zhang X, Jing R, Zhang C, Ma Y, Gao L, Gao C, Spannagl M, Mayer KF, Li D, Pan S, Zheng F, Hu Q, Xia X, Li J, Liang Q, Chen J, Wicker T, Gou C, Kuang H, He G, Luo Y, Keller B, Xia Q, Lu"
    "Nature (2013) 496:91-95