miRBase entry: ata-MIR156c

Stem-loop ata-MIR156c


Accession
MI0031662
Description
Aegilops tauschii ata-MIR156c precursor miRNA
Gene family
MIPF0000008; MIR156

Literature search
1 open access papers mention ata-MIR156c
(38 sentences)

Sequence

gcgcgcgcggUGACAGAAGAGAGUGAGCACacggccgggcgggacggcacccgccggauggugccgucacggccgcguGCUCACUGCUCUAUCUGUCACCagcugcuucu
(((.((..((((((((((((((((((((((.((((((.....(((((((((........))))))))).)))))).))))))))).)))).))))))))).)))))....

Structure
----   c  gc         -    -         a      ggcgg         cgc 
    gcg gc  ggUGACAGA AGAG AGUGAGCAC cggccg     gacggcacc   c
    ||| ||  ||||||||| |||| ||||||||| ||||||     |||||||||    
    cgu cg  CCACUGUCU UCUC UCACUCGug gccggc     cugccgugg   g
ucuu   -  -a         A    G         c      ----a         uag 


Annotation confidence Not enough data
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Genome context
chr2: 375901341-375901450 [-]

Database links

Mature ata-miR156c-5p

Accession MIMAT0037118
Description Aegilops tauschii ata-miR156c-5p mature miRNA
Sequence 11 - UGACAGAAGAGAGUGAGCAC - 30
Evidence experimental
Illumina [1]

Mature ata-miR156c-3p

Accession MIMAT0037119
Description Aegilops tauschii ata-miR156c-3p mature miRNA
Sequence 79 - GCUCACUGCUCUAUCUGUCACC - 100
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23535592
    Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation
    "Jia J, Zhao S, Kong X, Li Y, Zhao G, He W, Appels R, Pfeifer M, Tao Y, Zhang X, Jing R, Zhang C, Ma Y, Gao L, Gao C, Spannagl M, Mayer KF, Li D, Pan S, Zheng F, Hu Q, Xia X, Li J, Liang Q, Chen J, Wicker T, Gou C, Kuang H, He G, Luo Y, Keller B, Xia Q, Lu"
    "Nature (2013) 496:91-95