Stem-loop ata-MIR156a

Accession

MI0031664

Description

Aegilops tauschii ata-MIR156a precursor miRNA

Gene family

MIPF0000008; MIR156

Literature search

1 open access papers mention ata-MIR156a
(38 sentences)

Sequence

uuuggaggucUGACAGAAGAGAGUGAGCACacgcggugguuuccuagcaugcgagcgccaugcugggagcugcgcguGCUCACCCUCUCUCUGUCAGCcauucaccau
..((((((.((((((((((((.((((((((.((((((....(((((((((((....).)))))))))))))))).)))))))).)))).)))))))))).))))....

Structure

--uu    -  u        -    A        a      gguu          - g 
    ugga gg cUGACAGA AGAG GUGAGCAC cgcggu    uccuagcaug c a
    |||| || |||||||| |||| |||||||| ||||||    |||||||||| |  
    acuu cC GACUGUCU UCUC CACUCGug gcgucg    agggucguac g g
uacc    a  -        C    C        c      ----          c c 

Annotation confidence Not enough data

Genome context

chr3: 66945233-66945340 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ata-MIR156a

Mature ata-miR156a-5p

• Accession: MIMAT0037122
• Description: Aegilops tauschii ata-miR156a-5p mature miRNA
• Sequence: 11 - UGACAGAAGAGAGUGAGCAC - 30
• Evidence: experimental ; Illumina [1]

Mature ata-miR156a-3p

• Accession: MIMAT0037123
• Description: Aegilops tauschii ata-miR156a-3p mature miRNA
• Sequence: 78 - GCUCACCCUCUCUCUGUCAGC - 98
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23535592
   Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation
   "Jia J, Zhao S, Kong X, Li Y, Zhao G, He W, Appels R, Pfeifer M, Tao Y, Zhang X, Jing R, Zhang C, Ma Y, Gao L, Gao C, Spannagl M, Mayer KF, Li D, Pan S, Zheng F, Hu Q, Xia X, Li J, Liang Q, Chen J, Wicker T, Gou C, Kuang H, He G, Luo Y, Keller B, Xia Q, Lu"
   "Nature (2013) 496:91-95