Stem-loop ata-MIR5168

Accession

MI0031668

Description

Aegilops tauschii ata-MIR5168 precursor miRNA

Gene family

MIPF0000004; MIR166

Sequence

aguuagguuaaggGGGUUGUUGUCUGGUUCAAGGucuccacauacaucauauacauggagagcaugguauauggauuguaugauuuggugaucUCGGACCAGGCUUCAAUCCCUuuaaccagca
.(((.((((((((((((((..(((((((((.(((((.((((((((((((((((((((.....))).))))))))..))))))...))).))))).)))))))))..))))))))))))))))).

Structure

a   a              UU         A     u   ---      --        -   g 
 guu gguuaaggGGGUUG  GUCUGGUUC AGGuc cca   cauaca  ucauauac aug a
 ||| ||||||||||||||  ||||||||| ||||| |||   ||||||  |||||||| ||| g
 cga ccaauuUCCCUAAC  CGGACCAGG Ucuag ggu   guaugu  gguauaug uac a
a   -              UU         C     u   uua      ua        g   g 

Annotation confidence Not enough data

Genome context

chr5: 243800257-243800380 [+]

Mature ata-miR5168-5p

• Accession: MIMAT0037130
• Description: Aegilops tauschii ata-miR5168-5p mature miRNA
• Sequence: 14 - GGGUUGUUGUCUGGUUCAAGG - 34
• Evidence: experimental ; Illumina [1]

Mature ata-miR5168-3p

• Accession: MIMAT0037131
• Description: Aegilops tauschii ata-miR5168-3p mature miRNA
• Sequence: 94 - UCGGACCAGGCUUCAAUCCCU - 114
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23535592
   Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation
   "Jia J, Zhao S, Kong X, Li Y, Zhao G, He W, Appels R, Pfeifer M, Tao Y, Zhang X, Jing R, Zhang C, Ma Y, Gao L, Gao C, Spannagl M, Mayer KF, Li D, Pan S, Zheng F, Hu Q, Xia X, Li J, Liang Q, Chen J, Wicker T, Gou C, Kuang H, He G, Luo Y, Keller B, Xia Q, Lu"
   "Nature (2013) 496:91-95