miRBase entry: ata-MIR172a

Stem-loop ata-MIR172a


Accession
MI0031670
Description
Aegilops tauschii ata-MIR172a precursor miRNA
Gene family
MIPF0000035; MIR172

Literature search
1 open access papers mention ata-MIR172a
(2 sentences)

Sequence

guuugcgggcGCGGCACCAUCAAGAUUCACAuccaucccauccaggcauccuucgguucguuuccaaaacgaaacgaucgacaacgcguuggauacaauauagaugugcaugAGAAUCUUGAUGAUGCUGCGUccgcacacaa
((.(((((((((((((.(((((((((((.((((((((..((((((((.....(((((.((((((......)))))))))))....)).))))))........)))).).))).))))))))))).))))))))))))).))..

Structure
--  u             C           A   - -    ------cc      -  auccu     u      ca 
  gu ugcgggcGCGGCA CAUCAAGAUUC CAu c cauc        auccag gc     ucggu cguuuc  a
  || ||||||||||||| ||||||||||| ||| | ||||        |||||| ||     ||||| ||||||   
  ca acgccUGCGUCGU GUAGUUCUAAG gua g guag        uagguu cg     agcua gcaaag  a
aa  c             A           A   c u    auauaaca      g  -caac     -      ca 


Annotation confidence Not enough data
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Genome context
chr7: 7396218-7396360 [+]

Database links

Mature ata-miR172a-5p

Accession MIMAT0037134
Description Aegilops tauschii ata-miR172a-5p mature miRNA
Sequence 11 - GCGGCACCAUCAAGAUUCACA - 31
Evidence experimental
Illumina [1]

Mature ata-miR172a-3p

Accession MIMAT0037135
Description Aegilops tauschii ata-miR172a-3p mature miRNA
Sequence 113 - AGAAUCUUGAUGAUGCUGCGU - 133
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23535592
    Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation
    "Jia J, Zhao S, Kong X, Li Y, Zhao G, He W, Appels R, Pfeifer M, Tao Y, Zhang X, Jing R, Zhang C, Ma Y, Gao L, Gao C, Spannagl M, Mayer KF, Li D, Pan S, Zheng F, Hu Q, Xia X, Li J, Liang Q, Chen J, Wicker T, Gou C, Kuang H, He G, Luo Y, Keller B, Xia Q, Lu"
    "Nature (2013) 496:91-95