miRBase entry: ata-MIR5200

Stem-loop ata-MIR5200


Accession
MI0031672
Description
Aegilops tauschii ata-MIR5200 precursor miRNA
Gene family
MIPF0001904; MIR5200


Sequence

uuaagcacuaAAGCCUUAGUGAAUAUCUACAcuaguaaguuuuucuucaugcuggaaaugcuuagcauUGUAGAUACUCCCUAAGGCUUgggugguauu
...(.((((.(((((((((.((.((((((((....(((((.(((((.......))))).)))))....)))))))).)).))))))))).)))).)...

Structure
uua g    a         U  A        cuag     u     uc 
   a cacu AAGCCUUAG GA UAUCUACA    uaagu uuucu  a
   | |||| ||||||||| || ||||||||    ||||| |||||  u
   u gugg UUCGGAAUC CU AUAGAUGU    auucg aaagg  g
uua g    g         C  C        uacg     u     uc 


Annotation confidence Not enough data
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Genome context
chr7: 61059186-61059284 [+]

Database links

Mature ata-miR5200-5p

Accession MIMAT0037138
Description Aegilops tauschii ata-miR5200-5p mature miRNA
Sequence 11 - AAGCCUUAGUGAAUAUCUACA - 31
Evidence experimental
Illumina [1]

Mature ata-miR5200-3p

Accession MIMAT0037139
Description Aegilops tauschii ata-miR5200-3p mature miRNA
Sequence 69 - UGUAGAUACUCCCUAAGGCUU - 89
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23535592
    Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation
    "Jia J, Zhao S, Kong X, Li Y, Zhao G, He W, Appels R, Pfeifer M, Tao Y, Zhang X, Jing R, Zhang C, Ma Y, Gao L, Gao C, Spannagl M, Mayer KF, Li D, Pan S, Zheng F, Hu Q, Xia X, Li J, Liang Q, Chen J, Wicker T, Gou C, Kuang H, He G, Luo Y, Keller B, Xia Q, Lu"
    "Nature (2013) 496:91-95