Stem-loop ata-MIR395b

Accession

MI0031678

Description

Aegilops tauschii ata-MIR395b precursor miRNA

Gene family

MIPF0000016; MIR395

Sequence

cuuacugcggGUUCCCUGCAAACACUUCACGaagcauuauuucaaacgccauugcgaaguguuuggaggaacucuuggugaagucaagcuccaagaacuaagaaggugaucaauacgaagcauguuuggucuuaccguggguucccuacgagcacuccacgaggcauuauuccaaauaccacugugAAGUGUUUGGGGGAACUCuuggugaugc
.((((((.(((((((((.((((((((((((((((.....))))...(((....)))..((((((((((.....(((.(((.(((...((((...(((((.....(((((((((.((.......))))))))..)))...))))).....))))))).))).))).....))))))))))....))))))))))))))))))))).))))))...

Structure

--c      c         G            --------------------------------------------------------------------------------------------------------------------------------------------    c 
   uuacug ggGUUCCCU CAAACACUUCAC                                                                                                                                            Gaag a
   |||||| ||||||||| ||||||||||||                                                                                                                                            |||| u
   aguggu CUCAAGGGG GUUUGUGAAgug                                                                                                                                            cuuu u
cgu      u         -            ucaccauaaaccuuauuacggagcaccucacgagcaucccuugggugccauucugguuuguacgaagcauaacuaguggaagaaucaagaaccucgaacugaagugguucucaaggagguuugugaagcguuaccgcaaa    a 

Annotation confidence Not enough data

Genome context

chr2: 522773862-522774075 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ata-MIR395b

Mature ata-miR395b-5p

• Accession: MIMAT0037150
• Description: Aegilops tauschii ata-miR395b-5p mature miRNA
• Sequence: 11 - GUUCCCUGCAAACACUUCACG - 31
• Evidence: experimental ; Illumina [1]

Mature ata-miR395b-3p

• Accession: MIMAT0037151
• Description: Aegilops tauschii ata-miR395b-3p mature miRNA
• Sequence: 187 - AAGUGUUUGGGGGAACUC - 204
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23535592
   Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation
   "Jia J, Zhao S, Kong X, Li Y, Zhao G, He W, Appels R, Pfeifer M, Tao Y, Zhang X, Jing R, Zhang C, Ma Y, Gao L, Gao C, Spannagl M, Mayer KF, Li D, Pan S, Zheng F, Hu Q, Xia X, Li J, Liang Q, Chen J, Wicker T, Gou C, Kuang H, He G, Luo Y, Keller B, Xia Q, Lu"
   "Nature (2013) 496:91-95