Stem-loop ata-MIR395d

Accession

MI0031685

Description

Aegilops tauschii ata-MIR395d precursor miRNA

Gene family

MIPF0000016; MIR395

Sequence

guauuacugggAGUUCCCUUCAAGCACUUUACGaacuacuuuuuuaagguauuaugugaaguguuuggggaacucuuggugcaacuaagcacuuaaaagauauugcaagucauaaaccacacgagauguacugcaaaucccguuugguaucacugggaauuccuuucaaacacuuuacggaucaccuuucucagggcucaugUGAAGUGUUUGGGGGAACUCucgguguaac
....(((((((((((((((.(((((((((((((.....(((....(((((....((((((((((((((((((.((((((((..(((((((........(((.(((((.(((((............))).))))))))))..)))))))..)))))))).)))))..)))))))))))))....)))))....))).....))))))))))))))))))))))))))))....

Structure

guau               U             aacua   uuuu     auua             --     c        ca       acuuaaaa   a     a  -   aaacc 
    uacugggAGUUCCCU CAAGCACUUUACG     cuu    aaggu    ugugaaguguuug  gggaa ucuuggug  acuaagc        gau uugca gu cau     a
    ||||||||||||||| |||||||||||||     |||    |||||    |||||||||||||  ||||| ||||||||  |||||||        ||| ||||| || |||      
    guggcuCUCAAGGGG GUUUGUGAAGUgu     gga    uucca    gcauuucacaaac  uccuu agggucac  ugguuug        cua aacgu ca gua     c
caau               -             acucg   cucu     cuag             uu     a        ua       ------cc   -     -  u   gagca 

Annotation confidence Not enough data

Genome context

chr2: 522785958-522786189 [-]

Mature ata-miR395d-5p

• Accession: MIMAT0037164
• Description: Aegilops tauschii ata-miR395d-5p mature miRNA
• Sequence: 12 - AGUUCCCUUCAAGCACUUUACG - 33
• Evidence: experimental ; Illumina [1]

Mature ata-miR395d-3p

• Accession: MIMAT0037165
• Description: Aegilops tauschii ata-miR395d-3p mature miRNA
• Sequence: 203 - UGAAGUGUUUGGGGGAACUC - 222
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23535592
   Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation
   "Jia J, Zhao S, Kong X, Li Y, Zhao G, He W, Appels R, Pfeifer M, Tao Y, Zhang X, Jing R, Zhang C, Ma Y, Gao L, Gao C, Spannagl M, Mayer KF, Li D, Pan S, Zheng F, Hu Q, Xia X, Li J, Liang Q, Chen J, Wicker T, Gou C, Kuang H, He G, Luo Y, Keller B, Xia Q, Lu"
   "Nature (2013) 496:91-95