miRBase entry: ata-MIR169i

Stem-loop ata-MIR169i


Accession
MI0031686
Description
Aegilops tauschii ata-MIR169i precursor miRNA
Gene family
MIPF0000012; MIR169_1

Literature search
1 open access papers mention ata-MIR169i
(1 sentences)

Sequence

gcuucuucugaUAGCCAAGGAUGACUUGCCUGuggauauauagcuugaucgauugcaguuacaucucugaauguacgugaucugucacuguguacaacaGGCAGUCUCCUUGGCUAGCccgaguguc
....(((....((((((((((.((((.((((((.(.(((((((..((((.((((((.((.((((......)))))))))))).)))))))))))).))))))))))))))))))))....)))....

Structure
gcuu   cuga          U    U      g a       cu    c      a  u    cu 
    cuu    UAGCCAAGGA GACU GCCUGu g uauauag  ugau gauugc gu acau  c
    |||    |||||||||| |||| |||||| | |||||||  |||| |||||| || ||||   
    gag    AUCGGUUCCU CUGA CGGaca c auguguc  acug cuagug ca ugua  u
cugu   ccCG          -    -      a -       --    u      -  -    ag 


Annotation confidence Not enough data
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Genome context
chr5: 289918356-289918482 [+]

Database links

Mature ata-miR169i-5p

Accession MIMAT0037166
Description Aegilops tauschii ata-miR169i-5p mature miRNA
Sequence 12 - UAGCCAAGGAUGACUUGCCUG - 32
Evidence experimental
Illumina [1]

Mature ata-miR169i-3p

Accession MIMAT0037167
Description Aegilops tauschii ata-miR169i-3p mature miRNA
Sequence 100 - GGCAGUCUCCUUGGCUAGC - 118
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23535592
    Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation
    "Jia J, Zhao S, Kong X, Li Y, Zhao G, He W, Appels R, Pfeifer M, Tao Y, Zhang X, Jing R, Zhang C, Ma Y, Gao L, Gao C, Spannagl M, Mayer KF, Li D, Pan S, Zheng F, Hu Q, Xia X, Li J, Liang Q, Chen J, Wicker T, Gou C, Kuang H, He G, Luo Y, Keller B, Xia Q, Lu"
    "Nature (2013) 496:91-95