Stem-loop ata-MIR396e

Accession

MI0031687

Description

Aegilops tauschii ata-MIR396e precursor miRNA

Literature search

1 open access papers mention ata-MIR396e
(1 sentences)

Sequence

cuuugcugucUUCCACAGCUUUCUUGAACUGcaucugcaauugguggaugcuagcuucugcucgcaagaucugcaGUUCAAUAAAGCUGUGGGAAAuugcagagag
((((((.((.((((((((((((.(((((((((((((((.....)))))(((.(((....))).))).....)))))))))).)))))))))))).)).))))))..

Structure

--      u  c            C          ucugcaauuggugga   u   u 
  cuuugc gu UUCCACAGCUUU UUGAACUGca               ugc agc u
  |||||| || |||||||||||| ||||||||||               ||| |||  
  gagacg uA AGGGUGUCGAAA AACUUGacgu               acg ucg c
ga      u  A            U          ----------cuaga   c   u 

Annotation confidence Not enough data

Genome context

chr7: 76829699-76829804 [+]

Mature ata-miR396e-5p

• Accession: MIMAT0037168
• Description: Aegilops tauschii ata-miR396e-5p mature miRNA
• Sequence: 11 - UUCCACAGCUUUCUUGAACUG - 31
• Evidence: experimental ; Illumina [1]

Mature ata-miR396e-3p

• Accession: MIMAT0037169
• Description: Aegilops tauschii ata-miR396e-3p mature miRNA
• Sequence: 76 - GUUCAAUAAAGCUGUGGGAAA - 96
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23535592
   Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation
   "Jia J, Zhao S, Kong X, Li Y, Zhao G, He W, Appels R, Pfeifer M, Tao Y, Zhang X, Jing R, Zhang C, Ma Y, Gao L, Gao C, Spannagl M, Mayer KF, Li D, Pan S, Zheng F, Hu Q, Xia X, Li J, Liang Q, Chen J, Wicker T, Gou C, Kuang H, He G, Luo Y, Keller B, Xia Q, Lu"
   "Nature (2013) 496:91-95