miRBase entry: ata-MIR6201

Stem-loop ata-MIR6201


Accession
MI0031689
Description
Aegilops tauschii ata-MIR6201 precursor miRNA
Gene family
MIPF0001960; MIR6201


Sequence

caccggcguuUGACCCUGAGGCACUCAUACCGccggcugguuuagaaugcuagcccguaugagugccuuuagaaugcuagcgGUACGAGUGUCUCAGGGCCAAacuccgauga
((.(((.(((((.(((((((((((((.((((((.(((((((.......))))))).((((.............))))..)))))).))))))))))))).))))).))).)).

Structure
-  c   c     A             A      -----------------------c       uu 
 ca cgg guuUG CCCUGAGGCACUC UACCGc                        ggcuggu  a
 || ||| ||||| ||||||||||||| ||||||                        |||||||  g
 gu gcc caAAC GGGACUCUGUGAG AUGgcg                        ccgaucg  a
a  a   u     C             C      aucguaagauuuccgugaguaugc       ua 


Annotation confidence Not enough data
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Genome context
chr6: 369820159-369820271 [+]

Database links

Mature ata-miR6201-5p

Accession MIMAT0037172
Description Aegilops tauschii ata-miR6201-5p mature miRNA
Sequence 11 - UGACCCUGAGGCACUCAUACCG - 32
Evidence experimental
Illumina [1]

Mature ata-miR6201-3p

Accession MIMAT0037173
Description Aegilops tauschii ata-miR6201-3p mature miRNA
Sequence 83 - GUACGAGUGUCUCAGGGCCAA - 103
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23535592
    Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation
    "Jia J, Zhao S, Kong X, Li Y, Zhao G, He W, Appels R, Pfeifer M, Tao Y, Zhang X, Jing R, Zhang C, Ma Y, Gao L, Gao C, Spannagl M, Mayer KF, Li D, Pan S, Zheng F, Hu Q, Xia X, Li J, Liang Q, Chen J, Wicker T, Gou C, Kuang H, He G, Luo Y, Keller B, Xia Q, Lu"
    "Nature (2013) 496:91-95