miRBase entry: ata-MIR396b

Stem-loop ata-MIR396b


Accession
MI0031694
Description
Aegilops tauschii ata-MIR396b precursor miRNA
Gene family
MIPF0000047; MIR396

Literature search
1 open access papers mention ata-MIR396b
(1 sentences)

Sequence

ggccaugcucUCCACAGGCUUUCUUGAACUGucaacucgcgcgcgccggccauccauggccuuccuuugcugccgaauucgcauaugcucuugcaugucucgaucucgugcgauccgauggaucucugccugccuuguugaugGUUCAAGAAAGUCCUUGGAAaacaugcccgc
((.((((...((((..((((((((((((((((((((..(.(((.((.(((((....)))))..........(((((..(((.((((((....))))))..)))..))).))(((((...)))))...)).))))..))))))))))))))))))))..))))...)))).))..

Structure
--  c    cuc    CA                    uc c   c  cggccauccauggccuuccuuugcu  -   au   -c      u 
  gg caug   UCCA  GGCUUUCUUGAACUGucaac  g gcg gc                         gc cga  ucg  auaugc c
  || ||||   ||||  ||||||||||||||||||||  | ||| ||                         || |||  |||  ||||||  
  cc guac   AGGU  CUGAAAGAACUUGguaguug  c cgu cg                         cg gcu  agc  uguacg u
cg  c    aaA    UC                    uu -   c  ---------ucucuagguagccuag  u   cu   uc      u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature ata-miR396b-5p

Accession MIMAT0037182
Description Aegilops tauschii ata-miR396b-5p mature miRNA
Sequence 11 - UCCACAGGCUUUCUUGAACUG - 31
Evidence experimental
Illumina [1]

Mature ata-miR396b-3p

Accession MIMAT0037183
Description Aegilops tauschii ata-miR396b-3p mature miRNA
Sequence 144 - GUUCAAGAAAGUCCUUGGAA - 163
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23535592
    Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation
    "Jia J, Zhao S, Kong X, Li Y, Zhao G, He W, Appels R, Pfeifer M, Tao Y, Zhang X, Jing R, Zhang C, Ma Y, Gao L, Gao C, Spannagl M, Mayer KF, Li D, Pan S, Zheng F, Hu Q, Xia X, Li J, Liang Q, Chen J, Wicker T, Gou C, Kuang H, He G, Luo Y, Keller B, Xia Q, Lu"
    "Nature (2013) 496:91-95