miRBase entry: ata-MIR408

Stem-loop ata-MIR408


Accession
MI0031697
Description
Aegilops tauschii ata-MIR408 precursor miRNA
Gene family
MIPF0000102; MIR408


Sequence

agggcagaggagaCAGGGAUGGAGCAGAGCAAGGgauggggcaaacaacaaacuucaacugcuuccuuccacugaucaccuccugauuauaugacaagagcgagagaguugugagagaugagagcuuuuguuauuguuguuguuguugcucccucccUGCACUGCCUCUUCCCUGCCuccccuccca
.(((.((.((((.((((((.(((((((.(((.((((.(((((((.((((((....((((.............((((((.....)))))).(((((((((((......(((......)))....))))))))))).))))))))))))))))).))))))).))).)))))))))).)))).))))).

Structure
a   c  a    a      U    -   A   A    u       a      acuu    ugcuuccuuccacugaucaccuccugauuau           gagaga   gu 
 ggg ag ggag CAGGGA GGAG CAG GCA GGga ggggcaa caacaa    caac                               augacaagagc      guu  g
 ||| || |||| |||||| |||| ||| ||| |||| ||||||| ||||||    ||||                               |||||||||||      |||   
 ccc uc ccuC GUCCCU UCUC GUC CGU cccu ccucguu guuguu    guug                               uauuguuuucg      uag  a
a   -  c    C      -    C   A   -    c       -      ----    ------------------------------u           --agag   ag 


Annotation confidence Not enough data
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Genome context
chr7: 421297003-421297189 [-]

Database links

Mature ata-miR408-5p

Accession MIMAT0037188
Description Aegilops tauschii ata-miR408-5p mature miRNA
Sequence 14 - CAGGGAUGGAGCAGAGCAAGG - 34
Evidence experimental
Illumina [1]

Mature ata-miR408-3p

Accession MIMAT0037189
Description Aegilops tauschii ata-miR408-3p mature miRNA
Sequence 158 - UGCACUGCCUCUUCCCUGCC - 177
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23535592
    Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation
    "Jia J, Zhao S, Kong X, Li Y, Zhao G, He W, Appels R, Pfeifer M, Tao Y, Zhang X, Jing R, Zhang C, Ma Y, Gao L, Gao C, Spannagl M, Mayer KF, Li D, Pan S, Zheng F, Hu Q, Xia X, Li J, Liang Q, Chen J, Wicker T, Gou C, Kuang H, He G, Luo Y, Keller B, Xia Q, Lu"
    "Nature (2013) 496:91-95