miRBase entry: ata-MIR171a

Stem-loop ata-MIR171a


Accession
MI0031698
Description
Aegilops tauschii ata-MIR171a precursor miRNA
Gene family
MIPF0000104; MIR171_2


Sequence

gacgacaugcUGGUAUUGUUUCGGCUCAUGuccucgucgagcacaucgucggaugagaugUGAGCCGAACCAAUAUCACUCauguauucuu
((..(((((.((((((((.(((((((((((((.(((((..((.....))..)))))))))))))))))).))))))))..)))))..))..

Structure
--  cg     -c        U             c     ga  a 
  ga  acaug  UGGUAUUG UUCGGCUCAUGuc ucguc  gc c
  ||  |||||  |||||||| ||||||||||||| |||||  || a
  cu  uguaC  ACUAUAAC AAGCCGAGUguag aguag  ug u
uu  ua     UC        C             -     gc  c 


Annotation confidence Not enough data
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Genome context
chr2: 424680735-424680825 [-]

Database links

Mature ata-miR171a-5p

Accession MIMAT0037190
Description Aegilops tauschii ata-miR171a-5p mature miRNA
Sequence 11 - UGGUAUUGUUUCGGCUCAUG - 30
Evidence experimental
Illumina [1]

Mature ata-miR171a-3p

Accession MIMAT0037191
Description Aegilops tauschii ata-miR171a-3p mature miRNA
Sequence 61 - UGAGCCGAACCAAUAUCACUC - 81
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23535592
    Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation
    "Jia J, Zhao S, Kong X, Li Y, Zhao G, He W, Appels R, Pfeifer M, Tao Y, Zhang X, Jing R, Zhang C, Ma Y, Gao L, Gao C, Spannagl M, Mayer KF, Li D, Pan S, Zheng F, Hu Q, Xia X, Li J, Liang Q, Chen J, Wicker T, Gou C, Kuang H, He G, Luo Y, Keller B, Xia Q, Lu"
    "Nature (2013) 496:91-95