miRBase entry: ata-MIR399b

Stem-loop ata-MIR399b


Accession
MI0031702
Description
Aegilops tauschii ata-MIR399b precursor miRNA
Gene family
MIPF0000015; MIR399


Sequence

gugugaauccCAGGGCGCUUCUCCUUUGGCAcggaggcauacuuguacugaugguaggaguuggccaggugaggaagcuccaggccgaucagugugugcagcuagccagccgcgucgcgcgUGCCAAAGGAGAAUUGCCCUGcgauucaccu
..(((((((.(((((((.((((((((((((((...(((..((((.((((...)))).))))..))).(((..(((...)))..))).....((((((((.(((....))).))).))))))))))))))))))).))))))).)))))))..

Structure
gu       c       C              ---------------------------------------------------gga   au    g    g 
  gugaauc CAGGGCG UUCUCCUUUGGCAc                                                      ggc  acuu uacu  
  ||||||| ||||||| ||||||||||||||                                                      |||  |||| |||| a
  cacuuag GUCCCGU AAGAGGAAACCGUg                                                      ccg  ugag augg  
uc       c       U              cgcgcugcgccgaccgaucgacgugugugacuagccggaccucgaaggagugga   gu    g    u 


Annotation confidence Not enough data
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Genome context
chr4: 296544441-296544592 [+]

Database links

Mature ata-miR399b-5p

Accession MIMAT0037198
Description Aegilops tauschii ata-miR399b-5p mature miRNA
Sequence 11 - CAGGGCGCUUCUCCUUUGGCA - 31
Evidence experimental
Illumina [1]

Mature ata-miR399b-3p

Accession MIMAT0037199
Description Aegilops tauschii ata-miR399b-3p mature miRNA
Sequence 122 - UGCCAAAGGAGAAUUGCCCUG - 142
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23535592
    Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation
    "Jia J, Zhao S, Kong X, Li Y, Zhao G, He W, Appels R, Pfeifer M, Tao Y, Zhang X, Jing R, Zhang C, Ma Y, Gao L, Gao C, Spannagl M, Mayer KF, Li D, Pan S, Zheng F, Hu Q, Xia X, Li J, Liang Q, Chen J, Wicker T, Gou C, Kuang H, He G, Luo Y, Keller B, Xia Q, Lu"
    "Nature (2013) 496:91-95