Stem-loop ata-MIR395c

Accession

MI0031708

Description

Aegilops tauschii ata-MIR395c precursor miRNA

Gene family

MIPF0000016; MIR395

Sequence

gucaccuggaGUUCUCCUCAAAUCACUUCAauugcuagcuuaugccuaauuguugcauuggcacuguuuuaaagugugcauugcagggauaagagaggcgugcauagUGAAGUGUUUGGGGGAACUCuggguggcaa
(((((((((((((((((.((((.(((((((..(((..((((....((.(((.(((((.(((((((.......))))).)).))))).))).))..))))..)))...))))))))))))))))))))))))))))..

Structure

--                 U    U       -au   ua    augc  a   g     u  -     gu 
  gucaccuggaGUUCUCC CAAA CACUUCA   ugc  gcuu    cu auu uugca ug gcacu  u
  ||||||||||||||||| |||| |||||||   |||  ||||    || ||| ||||| || |||||  u
  cgguggguCUCAAGGGG GUUU GUGAAGU   acg  cgga    ga uag gacgu ac uguga  u
aa                 -    -       gau   ug    --ga  a   g     u  g     aa 

Annotation confidence Not enough data

Genome context

chr2: 522775061-522775197 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ata-MIR395c

Mature ata-miR395c-5p

• Accession: MIMAT0037210
• Description: Aegilops tauschii ata-miR395c-5p mature miRNA
• Sequence: 11 - GUUCUCCUCAAAUCACUUCA - 30
• Evidence: experimental ; Illumina [1]

Mature ata-miR395c-3p

• Accession: MIMAT0037211
• Description: Aegilops tauschii ata-miR395c-3p mature miRNA
• Sequence: 108 - UGAAGUGUUUGGGGGAACUC - 127
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23535592
   Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation
   "Jia J, Zhao S, Kong X, Li Y, Zhao G, He W, Appels R, Pfeifer M, Tao Y, Zhang X, Jing R, Zhang C, Ma Y, Gao L, Gao C, Spannagl M, Mayer KF, Li D, Pan S, Zheng F, Hu Q, Xia X, Li J, Liang Q, Chen J, Wicker T, Gou C, Kuang H, He G, Luo Y, Keller B, Xia Q, Lu"
   "Nature (2013) 496:91-95