miRBase entry: ata-MIR164b

Stem-loop ata-MIR164b


Accession
MI0031712
Description
Aegilops tauschii ata-MIR164b precursor miRNA
Gene family
MIPF0000045; MIR164


Sequence

gcgcgcgaggUGGAGAAGCAGGGCACGUGCAuucauuuccagcucgguucccggcguccggccggcuggcuggcacgcaccgccccggccuuuccuggcuagugugucgcucgauccggccgugcgccggcggccggcccaugcaugCAUGUGCCUUUCUUCUCCACCgugcacaccu
..(.(((.((((((((((.(((((((((((((.(((.....((.(((((.(((((((.(((((((..(((.(((((((...(((..((.....)).)))..))))))))))....))))))).))))))).)))))))..))).))))))))))))).)))))))))).))).)....

Structure
--gc c   a          C             u   uucca  u     c       c       --cu   u       acc   cc  c 
    g gcg ggUGGAGAAG AGGGCACGUGCAu cau     gc cgguu ccggcgu cggccgg    ggc ggcacgc   gcc  gg c
    | ||| |||||||||| ||||||||||||| |||     || ||||| ||||||| |||||||    ||| |||||||   |||  || u
    c cgu CCACCUCUUC UUCCGUGUACgua gua     cg gccgg ggccgcg gccggcc    ucg cugugug   cgg  cc u
ucca a   g          U             c   ---cc  -     c       u       uagc   -       -au   -u  u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr1: 396523233-396523410 [+]

Database links

Mature ata-miR164b-5p

Accession MIMAT0037218
Description Aegilops tauschii ata-miR164b-5p mature miRNA
Sequence 11 - UGGAGAAGCAGGGCACGUGCA - 31
Evidence experimental
Illumina [1]

Mature ata-miR164b-3p

Accession MIMAT0037219
Description Aegilops tauschii ata-miR164b-3p mature miRNA
Sequence 148 - CAUGUGCCUUUCUUCUCCACC - 168
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23535592
    Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation
    "Jia J, Zhao S, Kong X, Li Y, Zhao G, He W, Appels R, Pfeifer M, Tao Y, Zhang X, Jing R, Zhang C, Ma Y, Gao L, Gao C, Spannagl M, Mayer KF, Li D, Pan S, Zheng F, Hu Q, Xia X, Li J, Liang Q, Chen J, Wicker T, Gou C, Kuang H, He G, Luo Y, Keller B, Xia Q, Lu"
    "Nature (2013) 496:91-95