miRBase entry: ata-MIR2118b

Stem-loop ata-MIR2118b


Accession
MI0031713
Description
Aegilops tauschii ata-MIR2118b precursor miRNA
Gene family
MIPF0000745; MIR2118

Literature search
1 open access papers mention ata-MIR2118b
(1 sentences)

Sequence

guuugguguuUUCCCGAUGCCUCCCAUUCCUAugguucuugagcacuccuuccucuucccuuucgcuugcucaauagauuaauucauaaaucauaaauaugugugcacauacuuagauaaucugagaucuagaaugcuaguugagaagaggaagaaaagagaucccgagagcaguGGGAAUGGGAACAUGGAGGAAacccuaaag
.(((((.((((((((.(((..((((((((((((.(((((((.(..(((((((((((((....(((((.((....((((((...(((...(((.(((.(((((....))))).))))))....)))))))))....)).)).)))))))))))))....)))..).))))))).)))))))))))).))))).)))))).))))).

Structure
g     u      -  G   CC            g       a ca   ----          ccuu   -  u  ucaa      aau   -uaa   a   a     g 
 uuugg guuUUC CC AUG  UCCCAUUCCUAu guucuug g  cuc    cuuccucuuc    ucg cu gc    uagauu   uca    auc uaa uaugu u
 ||||| |||||| || |||  |||||||||||| ||||||| |  |||    ||||||||||    ||| || ||    ||||||   |||    ||| ||| |||||  
 aaauc caAAGG GG UAC  AGGGUAAGGGug cgagagc c  gag    gaaggagaag    agu ga cg    aucuag   agu    uag auu auaca g
g     c      A  -   -A            a       c ua   aaaa          ----   u  u  uaag      ---   cuaa   -   c     c 


Annotation confidence Not enough data
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Genome context
chr2: 441266102-441266306 [+]

Database links

Mature ata-miR2118b-5p

Accession MIMAT0037220
Description Aegilops tauschii ata-miR2118b-5p mature miRNA
Sequence 11 - UUCCCGAUGCCUCCCAUUCCUA - 32
Evidence experimental
Illumina [1]

Mature ata-miR2118b-3p

Accession MIMAT0037221
Description Aegilops tauschii ata-miR2118b-3p mature miRNA
Sequence 176 - GGGAAUGGGAACAUGGAGGAA - 196
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23535592
    Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation
    "Jia J, Zhao S, Kong X, Li Y, Zhao G, He W, Appels R, Pfeifer M, Tao Y, Zhang X, Jing R, Zhang C, Ma Y, Gao L, Gao C, Spannagl M, Mayer KF, Li D, Pan S, Zheng F, Hu Q, Xia X, Li J, Liang Q, Chen J, Wicker T, Gou C, Kuang H, He G, Luo Y, Keller B, Xia Q, Lu"
    "Nature (2013) 496:91-95