Stem-loop ata-MIR2118b

Accession

MI0031713

Description

Aegilops tauschii ata-MIR2118b precursor miRNA

Literature search

1 open access papers mention ata-MIR2118b
(1 sentences)

Sequence

guuugguguuUUCCCGAUGCCUCCCAUUCCUAugguucuugagcacuccuuccucuucccuuucgcuugcucaauagauuaauucauaaaucauaaauaugugugcacauacuuagauaaucugagaucuagaaugcuaguugagaagaggaagaaaagagaucccgagagcaguGGGAAUGGGAACAUGGAGGAAacccuaaag
.(((((.((((((((.(((..((((((((((((.(((((((.(..(((((((((((((....(((((.((....((((((...(((...(((.(((.(((((....))))).))))))....)))))))))....)).)).)))))))))))))....)))..).))))))).)))))))))))).))))).)))))).))))).

Structure

g     u      -  G   CC            g       a ca   ----          ccuu   -  u  ucaa      aau   -uaa   a   a     g 
 uuugg guuUUC CC AUG  UCCCAUUCCUAu guucuug g  cuc    cuuccucuuc    ucg cu gc    uagauu   uca    auc uaa uaugu u
 ||||| |||||| || |||  |||||||||||| ||||||| |  |||    ||||||||||    ||| || ||    ||||||   |||    ||| ||| |||||  
 aaauc caAAGG GG UAC  AGGGUAAGGGug cgagagc c  gag    gaaggagaag    agu ga cg    aucuag   agu    uag auu auaca g
g     c      A  -   -A            a       c ua   aaaa          ----   u  u  uaag      ---   cuaa   -   c     c 

Annotation confidence Not enough data

Genome context

chr2: 441266102-441266306 [+]

Mature ata-miR2118b-5p

• Accession: MIMAT0037220
• Description: Aegilops tauschii ata-miR2118b-5p mature miRNA
• Sequence: 11 - UUCCCGAUGCCUCCCAUUCCUA - 32
• Evidence: experimental ; Illumina [1]

Mature ata-miR2118b-3p

• Accession: MIMAT0037221
• Description: Aegilops tauschii ata-miR2118b-3p mature miRNA
• Sequence: 176 - GGGAAUGGGAACAUGGAGGAA - 196
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23535592
   Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation
   "Jia J, Zhao S, Kong X, Li Y, Zhao G, He W, Appels R, Pfeifer M, Tao Y, Zhang X, Jing R, Zhang C, Ma Y, Gao L, Gao C, Spannagl M, Mayer KF, Li D, Pan S, Zheng F, Hu Q, Xia X, Li J, Liang Q, Chen J, Wicker T, Gou C, Kuang H, He G, Luo Y, Keller B, Xia Q, Lu"
   "Nature (2013) 496:91-95