Stem-loop ata-MIR171d

Accession

MI0031717

Description

Aegilops tauschii ata-MIR171d precursor miRNA

Gene family

MIPF0000030; MIR171_1

Sequence

gucacuaugaUGUUGGCUCGACUCACUCAGAccacgccggccggccggccggagccauccgcggcggugguucUGAUUGAGCCGUGCCAAUAUCuuagugaucu
(((((((.(((((((((.((.((((.(((((((((.((((((....)))))).(((......))).)))).))))).)))).)).))))))))).)))))))..

Structure

--       u         U  A    C     -    -------------g      g 
  gucacua gaUGUUGGC CG CUCA UCAGA ccac              ccggcc g
  ||||||| ||||||||| || |||| ||||| ||||              ||||||  
  uagugau CUAUAACCG GC GAGU AGUcu ggug              ggccgg c
uc       u         U  C    U     u    gcggcgccuaccga      c 

Annotation confidence Not enough data

Genome context

chr4: 388577366-388577469 [+]

Mature ata-miR171d-5p

• Accession: MIMAT0037228
• Description: Aegilops tauschii ata-miR171d-5p mature miRNA
• Sequence: 11 - UGUUGGCUCGACUCACUCAGA - 31
• Evidence: experimental ; Illumina [1]

Mature ata-miR171d-3p

• Accession: MIMAT0037229
• Description: Aegilops tauschii ata-miR171d-3p mature miRNA
• Sequence: 74 - UGAUUGAGCCGUGCCAAUAUC - 94
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23535592
   Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation
   "Jia J, Zhao S, Kong X, Li Y, Zhao G, He W, Appels R, Pfeifer M, Tao Y, Zhang X, Jing R, Zhang C, Ma Y, Gao L, Gao C, Spannagl M, Mayer KF, Li D, Pan S, Zheng F, Hu Q, Xia X, Li J, Liang Q, Chen J, Wicker T, Gou C, Kuang H, He G, Luo Y, Keller B, Xia Q, Lu"
   "Nature (2013) 496:91-95