Stem-loop ata-MIR398g

Accession

MI0031718

Description

Aegilops tauschii ata-MIR398g precursor miRNA

Gene family

MIPF0000107; MIR398

Sequence

cgaggaaauuccugugGGGUCGAGCUGGGAACACAUGagauaugaaccgcuugauugacgagcgucucuuaucaacucaUGUGUUCUCAGGUCGCCCCCGcuggagccuc
.((((...((((.((((((.(((.((((((((((((((((((.((..((((((.....))))))..)).))))...)))))))))))))).))).)))))).))))))))

Structure

c    aaa    u      U   G              ---    u  ac      a 
 gagg   uucc gugGGG CGA CUGGGAACACAUGa   gaua ga  cgcuug u
 ||||   |||| |||||| ||| ||||||||||||||   |||| ||  |||||| u
 cucc   gagg cGCCCC GCU GACUCUUGUGUacu   cuau cu  gcgagc g
-    ---    u      C   G              caa    u  cu      a 

Annotation confidence Not enough data

Genome context

chr3: 426371670-426371779 [-]

Mature ata-miR398g-5p

• Accession: MIMAT0037230
• Description: Aegilops tauschii ata-miR398g-5p mature miRNA
• Sequence: 17 - GGGUCGAGCUGGGAACACAUG - 37
• Evidence: experimental ; Illumina [1]

Mature ata-miR398g-3p

• Accession: MIMAT0037231
• Description: Aegilops tauschii ata-miR398g-3p mature miRNA
• Sequence: 80 - UGUGUUCUCAGGUCGCCCCCG - 100
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23535592
   Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation
   "Jia J, Zhao S, Kong X, Li Y, Zhao G, He W, Appels R, Pfeifer M, Tao Y, Zhang X, Jing R, Zhang C, Ma Y, Gao L, Gao C, Spannagl M, Mayer KF, Li D, Pan S, Zheng F, Hu Q, Xia X, Li J, Liang Q, Chen J, Wicker T, Gou C, Kuang H, He G, Luo Y, Keller B, Xia Q, Lu"
   "Nature (2013) 496:91-95