miRBase entry: ata-MIR394

Stem-loop ata-MIR394


Accession
MI0031720
Description
Aegilops tauschii ata-MIR394 precursor miRNA
Gene family
MIPF0000100; MIR394


Sequence

cgagagcucuUUGGCAUUCUGUCCACCUCCuugugaaucuugcaggggagaucucacgaucugucgagcuugcggguugcuuggAGGUGGGCAUACUGCCAAUGGagcuguguag
..(.((((((((((((...(((((((((((..((((..(((((((((.(((((....))))).)....))))))))))))..)))))))))))...)))))).)))))).)....

Structure
--cg g      -      UUC           uu    au        ---- g     u 
    a agcucu UUGGCA   UGUCCACCUCC  guga  cuugcagg    g agauc c
    | |||||| ||||||   |||||||||||  ||||  ||||||||    | |||||  
    u ucgaGG AACCGU   ACGGGUGGAgg  cguu  gggcguuc    u ucuag a
gaug g      U      CAU           uu    --        gagc g     c 


Annotation confidence Not enough data
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Genome context
AOCO02001108.1: 10953161-10953275 [+]

Database links

Mature ata-miR394-5p

Accession MIMAT0037234
Description Aegilops tauschii ata-miR394-5p mature miRNA
Sequence 11 - UUGGCAUUCUGUCCACCUCC - 30
Evidence experimental
Illumina [1]

Mature ata-miR394-3p

Accession MIMAT0037235
Description Aegilops tauschii ata-miR394-3p mature miRNA
Sequence 85 - AGGUGGGCAUACUGCCAAUGG - 105
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23535592
    Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation
    "Jia J, Zhao S, Kong X, Li Y, Zhao G, He W, Appels R, Pfeifer M, Tao Y, Zhang X, Jing R, Zhang C, Ma Y, Gao L, Gao C, Spannagl M, Mayer KF, Li D, Pan S, Zheng F, Hu Q, Xia X, Li J, Liang Q, Chen J, Wicker T, Gou C, Kuang H, He G, Luo Y, Keller B, Xia Q, Lu"
    "Nature (2013) 496:91-95