miRBase entry: ata-MIR319

Stem-loop ata-MIR319


Accession
MI0031725
Description
Aegilops tauschii ata-MIR319 precursor miRNA
Gene family
MIPF0000010; MIR159

Literature search
1 open access papers mention ata-MIR319
(1 sentences)

Sequence

ucugugugagagagcucucuucaguccacucucagaugguuguaggguuuuauuAGCUGCCGAUUCAUUCAUUCAccuaccaagaaccaaggcggagcgcaugucuugguagccgACUGGAUGACGCGGGAGCUAAuauuuagcucgacguuguuugugguuggacugaagggugcucccuugcucgcagu
.(((((((((.((((.((((((((((((.((.((((((..(((.(((((.((((((((.(((..(((((((.((..(((((((((..((..(((...))).)))))))))))..)).)))))))..))).))))))))...))))).))).)))))).)).)))))))))))).)))).)))))..)))).

Structure
u    --     a    u            c  u      gu   a     --u        G   AU       U  Ac         ac  ag   g 
 cugu  gugag gagc cucuucagucca uc cagaug  ugu ggguu   uauuAGCU CCG  UCAUUCA UC  cuaccaaga  ca  gcg  
 ||||  ||||| |||| |||||||||||| || ||||||  ||| |||||   |||||||| |||  ||||||| ||  |||||||||  ||  ||| a
 gacg  cguuc cucg gggaagucaggu gg guuugu  gca cucga   auAAUCGA GGC  AGUAGGU Ag  gaugguucu  gu  cgc  
u    cu     c    u            u  u      -u   g     uuu        G   GC       C  cc         --  -a   g 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr3: 198091819-198092009 [-]

Database links

Mature ata-miR319-5p

Accession MIMAT0037244
Description Aegilops tauschii ata-miR319-5p mature miRNA
Sequence 55 - AGCUGCCGAUUCAUUCAUUCA - 75
Evidence experimental
Illumina [1]

Mature ata-miR319-3p

Accession MIMAT0037245
Description Aegilops tauschii ata-miR319-3p mature miRNA
Sequence 116 - ACUGGAUGACGCGGGAGCUAA - 136
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23535592
    Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation
    "Jia J, Zhao S, Kong X, Li Y, Zhao G, He W, Appels R, Pfeifer M, Tao Y, Zhang X, Jing R, Zhang C, Ma Y, Gao L, Gao C, Spannagl M, Mayer KF, Li D, Pan S, Zheng F, Hu Q, Xia X, Li J, Liang Q, Chen J, Wicker T, Gou C, Kuang H, He G, Luo Y, Keller B, Xia Q, Lu"
    "Nature (2013) 496:91-95