miRBase entry: ata-MIR166c

Stem-loop ata-MIR166c


Accession
MI0031727
Description
Aegilops tauschii ata-MIR166c precursor miRNA
Gene family
MIPF0000004; MIR166

Literature search
1 open access papers mention ata-MIR166c
(1 sentences)

Sequence

cgguuuguggGGAACGUUGGCUGGCUCGAGGcauccuugccgacggcgcgggucgaggcgUCGGACCAGGCUUCAUUCCUUucaaaccgcc
(((((((.((((((.(..(.((((.((((.((((((.((((...)))).))))....)).)))).)))).)..).)))))).)))))))..

Structure
--       u      C UU G    C    G  ----    u    g 
  cgguuug ggGGAA G  G CUGG UCGA Gc    aucc ugcc  
  ||||||| |||||| |  | |||| |||| ||    |||| |||| a
  gccaaac UUCCUU C  C GACC GGCU cg    uggg gcgg  
cc       u      A UU G    A    g  gagc    c    c 


Annotation confidence Not enough data
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Genome context
chr6: 322577448-322577538 [+]

Database links

Mature ata-miR166c-5p

Accession MIMAT0037248
Description Aegilops tauschii ata-miR166c-5p mature miRNA
Sequence 11 - GGAACGUUGGCUGGCUCGAGG - 31
Evidence experimental
Illumina [1]

Mature ata-miR166c-3p

Accession MIMAT0037249
Description Aegilops tauschii ata-miR166c-3p mature miRNA
Sequence 61 - UCGGACCAGGCUUCAUUCCUU - 81
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23535592
    Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation
    "Jia J, Zhao S, Kong X, Li Y, Zhao G, He W, Appels R, Pfeifer M, Tao Y, Zhang X, Jing R, Zhang C, Ma Y, Gao L, Gao C, Spannagl M, Mayer KF, Li D, Pan S, Zheng F, Hu Q, Xia X, Li J, Liang Q, Chen J, Wicker T, Gou C, Kuang H, He G, Luo Y, Keller B, Xia Q, Lu"
    "Nature (2013) 496:91-95