miRBase entry: ata-MIR169h

Stem-loop ata-MIR169h


Accession
MI0031729
Description
Aegilops tauschii ata-MIR169h precursor miRNA
Gene family
MIPF0000037; MIR169_2

Literature search
1 open access papers mention ata-MIR169h
(1 sentences)

Sequence

gggcagaaugUAGCCAAGGAUGACUUGCCGGguaugugcauguaugcuucauggugaggguaugcaucccugcuuugaauccaugcugauauuuuccgGCAAGUUGUUCUUGGCUAGCaucuuguccu
((((((.(((((((((((((((((((((((((.((((.((.(((((.((((.(((.((((.......))))))).))))..)))))))))))..))))))))))))))))))))).)))).)))))).

Structure
-      a    -                     -u    g  u     -c    u   g    ua 
 gggcag augU AGCCAAGGAUGACUUGCCGGg  augu ca guaug  uuca ggu aggg  u
 |||||| |||| |||||||||||||||||||||  |||| || |||||  |||| ||| ||||  g
 ccuguu uaCG UCGGUUCUUGUUGAACGgccu  uaua gu cguac  aagu ucg uccc  c
u      c    A                     uu    -  -     cu    u   -    ua 


Annotation confidence Not enough data
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Genome context
chr7: 430309495-430309622 [-]

Database links

Mature ata-miR169h-5p

Accession MIMAT0037252
Description Aegilops tauschii ata-miR169h-5p mature miRNA
Sequence 11 - UAGCCAAGGAUGACUUGCCGG - 31
Evidence experimental
Illumina [1]

Mature ata-miR169h-3p

Accession MIMAT0037253
Description Aegilops tauschii ata-miR169h-3p mature miRNA
Sequence 99 - GCAAGUUGUUCUUGGCUAGC - 118
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23535592
    Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation
    "Jia J, Zhao S, Kong X, Li Y, Zhao G, He W, Appels R, Pfeifer M, Tao Y, Zhang X, Jing R, Zhang C, Ma Y, Gao L, Gao C, Spannagl M, Mayer KF, Li D, Pan S, Zheng F, Hu Q, Xia X, Li J, Liang Q, Chen J, Wicker T, Gou C, Kuang H, He G, Luo Y, Keller B, Xia Q, Lu"
    "Nature (2013) 496:91-95