Stem-loop vvi-MIR171j

Accession

MI0031743

Description

Vitis vinifera vvi-MIR171j precursor miRNA

Gene family

MIPF0000030; MIR171_1

Literature search

4 open access papers mention vvi-MIR171j
(14 sentences)

Sequence

1023 reads, 70 reads per million, 2 experiments

uagauacacgagauauugauacgguucaauuagaaagcuguguucuaaguuaagaacucuguuguuUGAUUGAGCCGUGCCAAUAUCacguccuacuucu
.......(((.(((((((.(((((((((((((((.(((.(.(((((......))))).).))).))))))))))))))).))))))).))).........

Structure

--uagauac   a       a               a   u u     aa 
         acg gauauug uacgguucaauuaga agc g guucu  g
         ||| ||||||| ||||||||||||||| ||| | |||||   
         ugc CUAUAAC GUGCCGAGUUAGUuu uug c caaga  u
ucuucaucc   a       C               g   u u     au 

Annotation confidence Not enough data

Genome context

NW_003725262.1: 486-585 [-]

Mature vvi-miR171j

• Accession: MIMAT0037305
• Description: Vitis vinifera vvi-miR171j mature miRNA
• Sequence: 67 - UGAUUGAGCCGUGCCAAUAUC - 87
• Evidence: experimental ; Array [2], Illumina [2]

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467


2. PubMed ID: 19939267
   High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
   Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
   BMC Genomics (2009) 10:558