miRBase entry: rno-mir-340-2

Stem-loop rno-mir-340-2


Accession
MI0031764
Description
Rattus norvegicus rno-mir-340-2 precursor miRNA
Gene family
MIPF0000191; mir-340

Literature search
10 open access papers mention rno-mir-340-2
(66 sentences)

Sequence

315196 reads, 359 reads per million, 499 experiments
cacuuguacucggugugaUUAUAAAGCAAUGAGACUGAUUgucaugugucguuugugggaUCCGUCUCAGUUACUUUAUAGCCauaccugguaucuua
.....(((((.((((((.((((((((...((((((.((((.(((((.......))))))))).))))))....)))))))).)))))).)))))....

Structure
cacuu     c      a        -CAA      U    g     ug 
     guacu ggugug UUAUAAAG    UGAGAC GAUU ucaug  u
     ||||| |||||| ||||||||    |||||| |||| |||||  c
     uaugg ccauaC GAUAUUUC    ACUCUG CUag ggugu  g
-auuc     u      C        AUUG      C    -     uu 


Annotation confidence High
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Genome context
chr10: 35571755-35571852 [+]

Database links

Mature rno-miR-340-5p

Accession MIMAT0004650
Description Rattus norvegicus rno-miR-340-5p mature miRNA
Sequence 19 - UUAUAAAGCAAUGAGACUGAUU - 40
Evidence experimental
cloned [2]

Mature rno-miR-340-3p

Accession MIMAT0000585
Description Rattus norvegicus rno-miR-340-3p mature miRNA
Sequence 61 - UCCGUCUCAGUUACUUUAUAGCC - 83
Evidence experimental
cloned [1]

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 14691248
    Identification of many microRNAs that copurify with polyribosomes in mammalian neurons
    "Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G"
    "Proc Natl Acad Sci U S A (2004) 101:360-365