Stem-loop rno-mir-3556b-2

Accession

MI0031769

Description

Rattus norvegicus rno-mir-3556b-2 precursor miRNA

Sequence

gcuggugcuuuucccccuacaucauaACCGAUUUCAAAUGGUGCUAgacaaaaacagacucugaacaccaggagaaaucggucagccuguguaagagauggaccagu
((((((.(.((((....((((.....(((((((((...(((((.((((...........))))..)))))...))))))))).....))))...)))).).))))))

Structure

      g u    cccc    ucaua         AAA     -C    caaa 
gcuggu c uuuc    uaca     ACCGAUUUC   UGGUG  UAga    a
|||||| | ||||    ||||     |||||||||   |||||  ||||    a
ugacca g agag    gugu     uggcuaaag   accac  gucu    c
      g u    -aau    ccgac         agg     aa    caga 

Annotation confidence Low

Genome context

chr13: 113782577-113782683 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from rno-mir-3556b-2

Mature rno-miR-3556b

• Accession: MIMAT0017818
• Description: Rattus norvegicus rno-miR-3556b mature miRNA
• Sequence: 27 - ACCGAUUUCAAAUGGUGCUA - 46
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249