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miRBase |
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Stem-loop sequence rno-mir-503-2 |
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Accession | MI0031773 (change log) | |||||||||||
Description | Rattus norvegicus miR-503-2 stem-loop | |||||||||||
Gene family | MIPF0000183; mir-503 | |||||||||||
Literature search |
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22 open access papers mention rno-mir-503-2 | |||||||||||
Stem-loop |
ua g u a gu 5' ugccc gcagcgggaacaguacu cag g gu u ||||| ||||||||||||||||| ||| | || u 3' auggg cgucgccuuuguuauga guc c cg g uc g - - ug |
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Deep sequencing |
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Confidence |
Annotation confidence: high
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Comments |
The mature sequence shown here represents the most commonly cloned form from large-scale cloning studies [2]. The ends of the miRNA may be offset with respect to previous annotations. |
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Genome context |
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Clustered miRNAs |
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Database links |
Mature sequence rno-miR-503-5p |
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Accession | MIMAT0003213 |
Previous IDs | rno-miR-503 |
Sequence |
6 - uagcagcgggaacaguacugcag - 28 |
Deep sequencing | 4252 reads, 280 experiments |
Evidence | experimental; cloned [1-2], SOLiD [3] |
Mature sequence rno-miR-503-3p |
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Accession | MIMAT0017224 |
Previous IDs | rno-miR-503* |
Sequence |
46 - ggaguauuguuuccgcugccugg - 68 |
Deep sequencing | 36274 reads, 437 experiments |
Evidence | experimental; SOLiD [3] |
References |
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1 |
PMID:16274478
"Identification of clustered microRNAs using an ab initio prediction method"
BMC Bioinformatics. 6:267(2005).
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2 |
PMID:17604727
"A mammalian microRNA expression atlas based on small RNA library sequencing"
Cell. 129:1401-1414(2007).
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3 |
PMID:20403161
"Small RNA expression and strain specificity in the rat"
BMC Genomics. 11:249(2010).
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