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miRBase |
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Stem-loop sequence rno-mir-542-3 |
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Accession | MI0031782 (change log) | |||||||||||
Description | Rattus norvegicus miR-542-3 stem-loop | |||||||||||
Gene family | MIPF0000185; mir-542 | |||||||||||
Literature search |
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9 open access papers mention rno-mir-542-3 | |||||||||||
Stem-loop |
g c gg uca auacc 5' ucucagac u ucgg auca ugucacgag a |||||||| | |||| |||| ||||||||| c 3' agggucug a aguc uagu acaguguuc u g a aa uag acgcg |
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Deep sequencing |
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Confidence |
Annotation confidence: high
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Genome context |
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Clustered miRNAs |
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Database links |
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Mature sequence rno-miR-542-5p |
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Accession | MIMAT0003178 |
Sequence |
11 - cucggggaucaucaugucacga - 32 |
Deep sequencing | 57324 reads, 453 experiments |
Evidence | experimental; cloned [1-2], SOLiD [3] |
Mature sequence rno-miR-542-3p |
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Accession | MIMAT0003179 |
Sequence |
49 - ugugacagauugauaacugaaa - 70 |
Deep sequencing | 219678 reads, 480 experiments |
Evidence | experimental; cloned [2], SOLiD [3] |
References |
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1 |
PMID:16274478
"Identification of clustered microRNAs using an ab initio prediction method"
BMC Bioinformatics. 6:267(2005).
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2 |
PMID:17604727
"A mammalian microRNA expression atlas based on small RNA library sequencing"
Cell. 129:1401-1414(2007).
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3 |
PMID:20403161
"Small RNA expression and strain specificity in the rat"
BMC Genomics. 11:249(2010).
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