miRBase entry: cre-MIR9897

Stem-loop cre-MIR9897


Accession
MI0031825
Description
Chlamydomonas reinhardtii cre-MIR9897 precursor miRNA


Sequence

agaaggacguggacguggaugccgauaagaaggagccguaaggUACCGGGCGUGGGGAGGGCAGGggcagggacggggaucaggggcagcugauccccgucccugccccugcccuccccgcgcccgguaccUUACGGCUCCUUCUUAUCGGCacaggguuuccgggcucugg
...(((.(.(((((.((..((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((......)))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))).)...)))).).)))..

Structure
aga   a g    --- g  ga                                                                gg 
   agg c ugga   c ug  ugccgauaagaaggagccguaaggUACCGGGCGUGGGGAGGGCAGGggcagggacggggaucag  g
   ||| | ||||   | ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   
   ucu g gccu   g ac  aCGGCUAUUCUUCCUCGGCAUUccauggcccgcgccccucccguccccgucccugccccuaguc  c
-gg   c g    uug g  --                                                                ga 


Annotation confidence Not enough data
Do you think this miRNA is real?
Comments
This sequence was incorrectly named MIR1174 in [1].

Genome context
Unknown

Database links

Mature cre-miR9897-5p

Accession MIMAT0037303
Description Chlamydomonas reinhardtii cre-miR9897-5p mature miRNA
Sequence 44 - UACCGGGCGUGGGGAGGGCAGG - 65
Evidence experimental
Illumina [1]

Mature cre-miR9897-3p

Accession MIMAT0037304
Description Chlamydomonas reinhardtii cre-miR9897-3p mature miRNA
Sequence 132 - UUACGGCUCCUUCUUAUCGGC - 152
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24127635
    Complementarity to an miRNA seed region is sufficient to induce moderate repression of a target transcript in the unicellular green alga Chlamydomonas reinhardtii
    "Yamasaki T, Voshall A, Kim EJ, Moriyama E, Cerutti H, Ohama T"
    "Plant J (2013) 76:1045-1056