Stem-loop cja-let-7a-1

Accession

MI0031832

Description

Callithrix jacchus cja-let-7a-1 precursor miRNA

Sequence

ggucauuuuccagccauugugauugcauguucccagguUGAGGUAGUAGGUUGUAUAGUUuagaauuacaucaagggagauaacuguacagccuccuagcuuuccuugggucuugcacaaaacaacauggugagaaugauc
((((((((((..((((((((...((((....((((((..(((.(((.(((((((((((((.........(((......)))))))))))))))).))).)))..))))))...))))....)))..)))))))))))))))

Structure

          ca     --   -gau    uguu      uU   G   U             uagaauuac   aa 
ggucauuuuc  gccau  ugu    ugca    cccagg  GAG UAG AGGUUGUAUAGUU         auc  g
||||||||||  |||||  |||    ||||    ||||||  ||| ||| |||||||||||||         |||   
cuaguaagag  uggua  aca    acgu    ggguuc  uuc auc uccgacaugucaa         uag  g
          --     ca   aaac    -ucu      cu   g   c             ---------   ag 

Annotation confidence Not enough data

Genome context

chr11: 19874202-19874342 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cja-let-7a-1

Mature cja-let-7a

• Accession: MIMAT0039324
• Description: Callithrix jacchus cja-let-7a mature miRNA
• Sequence: 39 - UGAGGUAGUAGGUUGUAUAGUU - 60
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25038751
   The common marmoset genome provides insight into primate biology and evolution
   "Marmoset Genome Sequencing and Analysis Consortium"
   "Nat Genet (2014) 46:850-857


2. PubMed ID: 28640911
   Evolution of microRNA in primates
   McCreight JC, Schneider SE, Wilburn DB, Swanson WJ
   PLoS One (2017) 12:e0176596