Stem-loop cja-mir-543

Accession

MI0031852

Description

Callithrix jacchus cja-mir-543 precursor miRNA

Sequence

gguacuuaaugagaaguugcccguguuguuuucgcuuuauuugugacgAAACAUUCGCGGUGCACUUCUUuuucaguauc
((((((.((.(((((((.(((((((.(((((((((.......))))..)))))..))))).))))))))).)).))))))

Structure

      u  u       u  -     -u     --    uu 
gguacu aa gagaagu gc ccgug  uguuu  ucgc  u
|||||| || ||||||| || |||||  |||||  ||||  a
cuauga uu UUCUUCA CG GGCGC  ACAAA  agug  u
      c  u       -  U     UU     gc    uu 

Annotation confidence Not enough data

Genome context

chr10: 126949308-126949387 [+]

Clustered miRNAs

10 other miRNAs are < 10 kb from cja-mir-543

Mature cja-miR-543

• Accession: MIMAT0039339
• Description: Callithrix jacchus cja-miR-543 mature miRNA
• Sequence: 49 - AAACAUUCGCGGUGCACUUCUU - 70
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25038751
   The common marmoset genome provides insight into primate biology and evolution
   "Marmoset Genome Sequencing and Analysis Consortium"
   "Nat Genet (2014) 46:850-857