Stem-loop cja-mir-338

Accession

MI0031854

Description

Callithrix jacchus cja-mir-338 precursor miRNA

Sequence

cccuccAACAAUAUCCUGGUGCUGAGUgaugacucacacgacuccagcaucagugauuuuguugaagaggg
(((((((((((.(((((((((((((((..((.....))..))).))))))))).))).))))))..)))))

Structure

     --      U   -         -   ga  a 
cccuc  cAACAA AUC CUGGUGCUG AGU  ug c
|||||  |||||| ||| ||||||||| |||  || u
gggag  guuguu uag gacuacgac uca  ac c
     aa      u   u         c   gc  a 

Annotation confidence Not enough data

Genome context

chr5: 130409543-130409613 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cja-mir-338

Mature cja-miR-338

• Accession: MIMAT0039341
• Description: Callithrix jacchus cja-miR-338 mature miRNA
• Sequence: 7 - AACAAUAUCCUGGUGCUGAGU - 27
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25038751
   The common marmoset genome provides insight into primate biology and evolution
   "Marmoset Genome Sequencing and Analysis Consortium"
   "Nat Genet (2014) 46:850-857