miRBase entry: cja-mir-181c

Stem-loop cja-mir-181c


Accession
MI0031857
Description
Callithrix jacchus cja-mir-181c precursor miRNA


Sequence

ggguuugggggAACAUUCAACCUGUCGGUGAGUuugggcagcucaggcaaaccaucgaccguugaguggacccugagaccu
((((((.((((..((((((((..(((((((.(((((...........)))))))))))).))))))))..)))).))))))

Structure
      g    AA        CU       A     ggca 
ggguuu gggg  CAUUCAAC  GUCGGUG GUuug    g
|||||| ||||  ||||||||  ||||||| |||||    c
uccaga uccc  gugaguug  cagcuac caaac    u
      g    ag        -c       -     ggac 


Annotation confidence Not enough data
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Genome context
chr22: 13111853-13111933 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from cja-mir-181c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cja-miR-181c

Accession MIMAT0039344
Description Callithrix jacchus cja-miR-181c mature miRNA
Sequence 12 - AACAUUCAACCUGUCGGUGAGU - 33
Evidence experimental
Illumina [1-2]

References

  1. PubMed ID: 25038751
    The common marmoset genome provides insight into primate biology and evolution
    "Marmoset Genome Sequencing and Analysis Consortium"
    "Nat Genet (2014) 46:850-857

  2. PubMed ID: 28640911
    Evolution of microRNA in primates
    McCreight JC, Schneider SE, Wilburn DB, Swanson WJ
    PLoS One (2017) 12:e0176596