miRBase entry: cja-mir-181a-2

Stem-loop cja-mir-181a-2


Accession
MI0031859
Description
Callithrix jacchus cja-mir-181a-2 precursor miRNA


Sequence

gaggacuccaaggAACAUUCAACGCUGUCGGUGAGUuugggauuugaaaaaaaaccacugaccguugacuguaccuugggguccuu
(((((((((((((.(((.((((((..(((((((.((((.............))))))))))))))))).))).)))))))))))))

Structure
             A   U      CU       A    gggau 
gaggacuccaagg ACA UCAACG  GUCGGUG GUuu     u
||||||||||||| ||| ||||||  ||||||| ||||     u
uuccugggguucc ugu aguugc  cagucac caaa     g
             a   c      --       -    aaaaa 


Annotation confidence Not enough data
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Genome context
chr1: 168507679-168507764 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from cja-mir-181a-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cja-miR-181a

Accession MIMAT0039345
Description Callithrix jacchus cja-miR-181a mature miRNA
Sequence 14 - AACAUUCAACGCUGUCGGUGAGU - 36
Evidence experimental
Illumina [1-2]

References

  1. PubMed ID: 25038751
    The common marmoset genome provides insight into primate biology and evolution
    "Marmoset Genome Sequencing and Analysis Consortium"
    "Nat Genet (2014) 46:850-857

  2. PubMed ID: 28640911
    Evolution of microRNA in primates
    McCreight JC, Schneider SE, Wilburn DB, Swanson WJ
    PLoS One (2017) 12:e0176596