miRBase entry: cja-mir-487a

Stem-loop cja-mir-487a


Accession
MI0031870
Description
Callithrix jacchus cja-mir-487a precursor miRNA


Sequence

gugggccgucagcaucgggcuucgguacuugaagagugguuaucccugcuguguucgcuuuauuuaugacgAAUCAUACAGGGACAUCCAGUUuuucaguaucaaauacugcuuuggagggccucc
..(((((.((.....(((..((.((((((.(((((.(((...((((((.(((((((((.........).)))).))))))))))...))).))))).)))))).))..))).....)).)))))..

Structure
gu     g  agcau   gc  c      u     g   uua      c    -    - uuu 
  gggcc uc     cgg  uu gguacu gaaga ugg   ucccug ugug uucg c   a
  ||||| ||     |||  || |||||| ||||| |||   |||||| |||| |||| |   u
  uccgg ag     guc  aa cuauga uuuUU ACC   AGGGAC AUAC AAgc g   u
cc     g  guuuc   au  a      c     G   UAC      -    U    a uau 


Annotation confidence Not enough data
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Genome context
chr10: 126969792-126969917 [+]
Clustered miRNAs
14 other miRNAs are < 10 kb from cja-mir-487a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cja-miR-487a

Accession MIMAT0039356
Description Callithrix jacchus cja-miR-487a mature miRNA
Sequence 72 - AAUCAUACAGGGACAUCCAGUU - 93
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25038751
    The common marmoset genome provides insight into primate biology and evolution
    "Marmoset Genome Sequencing and Analysis Consortium"
    "Nat Genet (2014) 46:850-857