miRBase entry: cja-mir-23b

Stem-loop cja-mir-23b

Accession

MI0031898

Description

Callithrix jacchus cja-mir-23b precursor miRNA

Sequence

uggcugcuuggguuccuggcaugcugauuugugacuuaagauuaaaAUCACAUUGCCAGGGAUUACCacgcaacca
(((.(((.(((((((((((((((.((((((..............)))))))).))))))))))..))).))).)))

Structure

   c   u   --          -  c      gugacu 
ugg ugc ugg  guuccuggca ug ugauuu      u
||| ||| |||  |||||||||| || ||||||       
acc acg aCC  UAGGGACCGU AC ACUAaa      a
   a   c   AU          U  -      auuaga

Annotation confidence Not enough data

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Genome context

chr1: 78274956-78275031 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from cja-mir-23b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cja-miR-23b

Accession	MIMAT0039380
Description	Callithrix jacchus cja-miR-23b mature miRNA
Sequence	47 - AUCACAUUGCCAGGGAUUACC - 67
Evidence	experimental Illumina [1-2]

References

PubMed ID: 25038751
The common marmoset genome provides insight into primate biology and evolution
"Marmoset Genome Sequencing and Analysis Consortium"
"Nat Genet (2014) 46:850-857

PubMed ID: 28640911
Evolution of microRNA in primates
McCreight JC, Schneider SE, Wilburn DB, Swanson WJ
PLoS One (2017) 12:e0176596