Stem-loop cja-mir-539

Accession

MI0031899

Description

Callithrix jacchus cja-mir-539 precursor miRNA

Sequence

gccgcuguuucauaccugaggagaaauuauccuugauguguucgcuuuauuuaugaugaAUCAUACAAGGACAAUUUCUCUuugaguaucaaauccugccucggc
(((((.((((.((((.((((((((((((.((((((.(((((((((.........).)))).)))))))))).)))))))))))).)))).))))...))...)))

Structure

   ---  --u    c    c            a      a    -    - uuu 
gcc   gc   guuu auac ugaggagaaauu uccuug ugug uucg c   a
|||   ||   |||| |||| |||||||||||| |||||| |||| |||| |   u
cgg   cg   uaaa uaug guuUCUCUUUAA AGGAAC AUAC Aagu g   u
   cuc  ucc    c    a            C      -    U    a uau 

Annotation confidence Not enough data

Genome context

chr10: 126964687-126964791 [+]

Clustered miRNAs

16 other miRNAs are < 10 kb from cja-mir-539

Mature cja-miR-539

• Accession: MIMAT0039381
• Description: Callithrix jacchus cja-miR-539 mature miRNA
• Sequence: 60 - AUCAUACAAGGACAAUUUCUCU - 81
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25038751
   The common marmoset genome provides insight into primate biology and evolution
   "Marmoset Genome Sequencing and Analysis Consortium"
   "Nat Genet (2014) 46:850-857


2. PubMed ID: 28640911
   Evolution of microRNA in primates
   McCreight JC, Schneider SE, Wilburn DB, Swanson WJ
   PLoS One (2017) 12:e0176596