miRBase entry: cja-mir-20b

Stem-loop cja-mir-20b

Accession

MI0031908

Description

Callithrix jacchus cja-mir-20b precursor miRNA

Sequence

guggauaagauuggguccuaguaguacCAAAGUGCUCAUAGUGCAGGUAGuuuuggcaugacucuacuguagugugggcacuucuaguacucuuggauaacaaaucucuuguuggc
((.((((((((((.((((.((.(((((..(((((((((((.(((((..((((.......))))...))))).)))))))))))...))))))).))))..)))...))))))).))

Structure

  g       ---   -g    u  u     -CA           G     -GU    uu 
gu gauaaga   uug  gucc ag aguac   AAGUGCUCAUA UGCAG   AGuu  g
|| |||||||   |||  |||| || |||||   ||||||||||| |||||   ||||  g
cg uuguucu   aac  uagg uc ucaug   uucacgggugu auguc   ucag  c
  g       cua   aa    u  -     auc           g     auc    ua

Annotation confidence Not enough data

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Genome context

chrX: 122082159-122082274 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from cja-mir-20b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cja-miR-20b

Accession	MIMAT0039389
Description	Callithrix jacchus cja-miR-20b mature miRNA
Sequence	28 - CAAAGUGCUCAUAGUGCAGGUAG - 50
Evidence	experimental Illumina [1-2]

References

PubMed ID: 25038751
The common marmoset genome provides insight into primate biology and evolution
"Marmoset Genome Sequencing and Analysis Consortium"
"Nat Genet (2014) 46:850-857

PubMed ID: 28640911
Evolution of microRNA in primates
McCreight JC, Schneider SE, Wilburn DB, Swanson WJ
PLoS One (2017) 12:e0176596