miRBase entry: cja-mir-424

Stem-loop cja-mir-424

Accession

MI0031915

Description

Callithrix jacchus cja-mir-424 precursor miRNA

Sequence

ccggucaaucccccuucguugacuccaaggggauaCAGCAGCAAUUCAUGUUUUGAagugcucuaaaugguucaaaacgugaagugcugcuauacccccuuguggggaaggaagaaggugggauaugccgg
(((((..((((((((((.((..((((((((((.((.(((((((.(((((((((((((.(.........).))))))))))))).))))))).)).))))))).)))..))...))))).)))))..)))))

Structure

     ca     -     --g  ga   -       a  C       A             g gcu 
ccggu  auccc ccuuc   uu  cuc caagggg ua AGCAGCA UUCAUGUUUUGAa u   c
|||||  ||||| |||||   ||  ||| ||||||| || ||||||| ||||||||||||| |   u
ggccg  uaggg ggaag   ga  ggg guucccc au ucgucgu aagugcaaaacuu g   a
     ua     u     aag  ag   u       c  a       g             g uaa

Annotation confidence Not enough data

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Genome context

chrX: 122453790-122453920 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from cja-mir-424

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cja-miR-424

Accession	MIMAT0039396
Description	Callithrix jacchus cja-miR-424 mature miRNA
Sequence	36 - CAGCAGCAAUUCAUGUUUUGA - 56
Evidence	experimental Illumina [1-2]

References

PubMed ID: 25038751
The common marmoset genome provides insight into primate biology and evolution
"Marmoset Genome Sequencing and Analysis Consortium"
"Nat Genet (2014) 46:850-857

PubMed ID: 28640911
Evolution of microRNA in primates
McCreight JC, Schneider SE, Wilburn DB, Swanson WJ
PLoS One (2017) 12:e0176596